IL_6MTE_224

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6MTE|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_224 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.2018

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6MTE|1|9|G|952
6MTE|1|9|C|953
6MTE|1|9|U|954
6MTE|1|9|A|955
6MTE|1|9|G|956
*
6MTE|1|9|C|967
6MTE|1|9|U|968
6MTE|1|9|U|969
6MTE|1|9|G|970
6MTE|1|9|G|971
6MTE|1|9|A|972
6MTE|1|9|C|973
6MTE|1|9|C|974

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

eS1

Chain OO

uS11