IL_6MTE_228

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_228 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.1304

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6MTE|1|9|C|1098
6MTE|1|9|G|1099
6MTE|1|9|A|1100
6MTE|1|9|U|1101
*
6MTE|1|9|G|1131
6MTE|1|9|C|1132
6MTE|1|9|A|1133
6MTE|1|9|G|1134

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain BB

eS1

Chain NN

uS15

Chain RR

eS17

Chain aa

eS26