IL_6MTE_231

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_231 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0914

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6MTE|1|9|G|1168
6MTE|1|9|G|1169
6MTE|1|9|A|1170
6MTE|1|9|G|1171
6MTE|1|9|U|1172
6MTE|1|9|A|1173
6MTE|1|9|U|1174
6MTE|1|9|G|1175
*
6MTE|1|9|U|1186
6MTE|1|9|G|1187
6MTE|1|9|A|1188
6MTE|1|9|A|1189
6MTE|1|9|A|1190
6MTE|1|9|C|1191

Current chains

Chain 9

18S rRNA

Nearby chains

Chain XX

uS12

Chain n

eL41