IL_6MTE_244

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(4AC)G*CAGG

Length

7 nucleotides

Bulged bases

6MTE|1|9|A|1489

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_244 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.1217

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6MTE|1|9|C|1336
6MTE|1|9|4AC|1337
6MTE|1|9|G|1338
*
6MTE|1|9|C|1488
6MTE|1|9|A|1489
6MTE|1|9|G|1490
6MTE|1|9|G|1491

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

uS5

Chain DD

uS3

Chain QQ

uS9

Chain UU

uS10

Chain dd

uS14

Chain v

eEF2

Chain w

SERBP1