IL_6MTE_255

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_255 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.1237

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6MTE|1|9|G|1702
6MTE|1|9|OMC|1703
6MTE|1|9|C|1704
6MTE|1|9|C|1705
*
6MTE|1|9|G|1829
6MTE|1|9|UR3|1830
6MTE|1|9|A|1831
6MTE|1|9|6MZ|1832
6MTE|1|9|C|1833

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain n

eL41

Chain w

SERBP1