IL_6MTE_272

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCC*GUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_272 not in the Motif Atlas

Geometric match to IL_8C3A_135

Geometric discrepancy: 0.3074

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6MTE|1|5|U|520
6MTE|1|5|C|521
6MTE|1|5|C|522
6MTE|1|5|C|523
*
6MTE|1|5|G|638
6MTE|1|5|U|639
6MTE|1|5|C|640
6MTE|1|5|G|641

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13