IL_6MTE_281

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_281 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0989

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6MTE|1|5|G|2358
6MTE|1|5|U|2359
6MTE|1|5|A|2360
6MTE|1|5|G|2361
6MTE|1|5|U|2362
6MTE|1|5|A2M|2363
6MTE|1|5|OMG|2364
*
6MTE|1|5|C|3858
6MTE|1|5|G|3859
6MTE|1|5|A|3860
6MTE|1|5|A|3861
6MTE|1|5|A|3862
6MTE|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain P

uL22