IL_8P9A_289

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8P9A|1|AR|G|1444
8P9A|1|AR|U|1445
8P9A|1|AR|A|1446
8P9A|1|AR|G|1447
8P9A|1|AR|U|1448
8P9A|1|AR|A|1449
8P9A|1|AR|G|1450
*
8P9A|1|AR|C|2354
8P9A|1|AR|G|2355
8P9A|1|AR|A|2356
8P9A|1|AR|A|2357
8P9A|1|AR|A|2358
8P9A|1|AR|C|2359

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CF

60S ribosomal protein L4-A

Chain CR

60S ribosomal protein L17-A