IL_6MTE_288

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6MTE|1|5|A2M|3785, 6MTE|1|5|C|3791, 6MTE|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_288 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.292

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6MTE|1|5|C|3781
6MTE|1|5|5MC|3782
6MTE|1|5|A|3783
6MTE|1|5|A|3784
6MTE|1|5|A2M|3785
6MTE|1|5|U|3786
6MTE|1|5|G|3787
6MTE|1|5|C|3788
6MTE|1|5|C|3789
6MTE|1|5|U|3790
6MTE|1|5|C|3791
6MTE|1|5|OMG|3792
*
6MTE|1|5|C|3808
6MTE|1|5|G|3809
6MTE|1|5|C|3810
6MTE|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41