IL_6MTE_290

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAGC*GGCUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_290 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.2789

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6MTE|1|5|G|4095
6MTE|1|5|C|4096
6MTE|1|5|G|4097
6MTE|1|5|A|4098
6MTE|1|5|G|4099
6MTE|1|5|C|4100
*
6MTE|1|5|G|4108
6MTE|1|5|G|4109
6MTE|1|5|C|4110
6MTE|1|5|U|4111
6MTE|1|5|C|4112
6MTE|1|5|U|4113

Current chains

Chain 5

28S rRNA

Nearby chains

Chain BB

eS1

Chain G

eL8

Chain g

eL34