IL_6MWN_003

3D structure

PDB id

6MWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

GAC*GUUC

Length

7 nucleotides

Bulged bases

6MWN|1|A|U|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MWN_003 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.3034

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6MWN|1|A|G|646
6MWN|1|A|A|647
6MWN|1|A|C|648
*
6MWN|1|A|G|658
6MWN|1|A|U|659
6MWN|1|A|U|660
6MWN|1|A|C|661

Current chains

Chain A

HAV dV RNA (92-MER)

Nearby chains

Chain C

Fab HAVx Heavy Chain