IL_6MWN_004

3D structure

PDB id

6MWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

UUUG*CUUAUG

Length

10 nucleotides

Bulged bases

6MWN|1|B|U|672, 6MWN|1|B|A|673, 6MWN|1|B|U|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_70096.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6MWN|1|B|U|604
6MWN|1|B|U|605
6MWN|1|B|U|606
6MWN|1|B|G|607
*
6MWN|1|B|C|670
6MWN|1|B|U|671
6MWN|1|B|U|672
6MWN|1|B|A|673
6MWN|1|B|U|674
6MWN|1|B|G|675

Current chains

Chain B

HAV dV RNA (92-MER)

Nearby chains

Chain C

Fab HAVx Heavy Chain

Chain D

Fab HAVx Light Chain