IL_6MWN_007

3D structure

PDB id

6MWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx

Experimental method

X-RAY DIFFRACTION

Resolution

2.84 Å

Loop

Sequence

AC*GUU

Length

5 nucleotides

Bulged bases

6MWN|1|A|U|659

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MWN_007 not in the Motif Atlas

Homologous match to IL_6MWN_006

Geometric discrepancy: 0.2138

The information below is about IL_6MWN_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6MWN|1|A|A|647
6MWN|1|A|C|648
*
6MWN|1|A|G|658
6MWN|1|A|U|659
6MWN|1|A|U|660

Current chains

Chain A

HAV dV RNA (92-MER)

Nearby chains

Chain C

Fab HAVx Heavy Chain