IL_6MXQ_016

3D structure

PDB id

6MXQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

6MXQ|4|A|C|112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MXQ_016 not in the Motif Atlas

Geometric match to IL_9E6Q_047

Geometric discrepancy: 0.3871

The information below is about IL_9E6Q_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6MXQ|4|A|G|111
6MXQ|4|A|C|112
6MXQ|4|A|A|113
*
6MXQ|4|A|U|129
6MXQ|4|A|C|130

Current chains

Chain A

RNA C-JUN TL

Nearby chains