6MXQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6MXQ_001 | 1/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_002 | 2/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_003 | 3/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_004 | 4/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_005 | 5/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_006 | 6/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_007 | 7/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_008 | 8/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_009 | 9/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 | |
| HL_6MXQ_010 | 10/A/1:6 | UNCG | geometric HL_4PMI_004 HL_61337.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6MXQ_001 | 1/A/98:100, 1/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_002 | 1/A/102:106, 1/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_003 | 1/A/108:110, 1/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_004 | 1/A/111:113, 1/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_005 | 2/A/98:100, 2/A/142:143 | Single stack bend | geometric IL_7A0S_054 IL_15011.4 | |
| IL_6MXQ_006 | 2/A/102:106, 2/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_007 | 2/A/108:110, 2/A/131:134 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_6MXQ_008 | 2/A/111:113, 2/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_041 | 3/A/98:100, 3/A/142:143 | Single stack bend | geometric IL_7MLX_001 IL_15011.4 | |
| IL_6MXQ_010 | 3/A/102:106, 3/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_011 | 3/A/108:110, 3/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_012 | 3/A/111:113, 3/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_042 | 4/A/98:100, 4/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_014 | 4/A/102:106, 4/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_015 | 4/A/108:110, 4/A/131:134 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_6MXQ_016 | 4/A/111:113, 4/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_043 | 5/A/98:100, 5/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_018 | 5/A/102:106, 5/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_019 | 5/A/108:110, 5/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_020 | 5/A/111:113, 5/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_021 | 6/A/98:100, 6/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_022 | 6/A/102:106, 6/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_023 | 6/A/108:110, 6/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_024 | 6/A/111:113, 6/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_025 | 7/A/98:100, 7/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_026 | 7/A/102:106, 7/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_027 | 7/A/108:110, 7/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_028 | 7/A/111:113, 7/A/129:130 | No text annotation | ||
| IL_6MXQ_029 | 8/A/98:100, 8/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_030 | 8/A/102:106, 8/A/136:140 | No text annotation | ||
| IL_6MXQ_031 | 8/A/108:110, 8/A/131:134 | No text annotation | geometric IL_4V84_070 NA | |
| IL_6MXQ_032 | 8/A/111:113, 8/A/129:130 | Major groove intercalation | geometric IL_5TBW_085 NA | |
| IL_6MXQ_044 | 9/A/98:100, 9/A/142:143 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6MXQ_034 | 9/A/102:106, 9/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_035 | 9/A/108:110, 9/A/131:134 | Multiple bulged bases, near cWW | geometric IL_5M0H_002 NA | |
| IL_6MXQ_036 | 9/A/111:113, 9/A/129:130 | No text annotation | geometric IL_9E6Q_047 IL_05642.4 | |
| IL_6MXQ_037 | 10/A/98:100, 10/A/142:143 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6MXQ_038 | 10/A/102:106, 10/A/136:140 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.4 | |
| IL_6MXQ_039 | 10/A/108:110, 10/A/131:134 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_6MXQ_040 | 10/A/111:113, 10/A/129:130 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6MXQ_009 | No text annotation | ||
| IL_6MXQ_013 | No text annotation | ||
| IL_6MXQ_017 | No text annotation | ||
| IL_6MXQ_033 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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