IL_6MXQ_017

3D structure

PDB id

6MXQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUAU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MXQ_017 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.2985

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6MXQ|5|A|G|97
6MXQ|5|A|U|98
6MXQ|5|A|A|99
6MXQ|5|A|U|100
*
6MXQ|5|A|A|142
6MXQ|5|A|A|143
6MXQ|5|A|C|144

Current chains

Chain A

RNA C-JUN TL

Nearby chains