IL_6N1D_002

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

6N1D|1|A16S|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_002 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.1162

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6N1D|1|A16S|G|44
6N1D|1|A16S|U|45
*
6N1D|1|A16S|G|396
6N1D|1|A16S|A|397
6N1D|1|A16S|C|398

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS16

30S ribosomal protein S16

Chain BL09

50S ribosomal protein L9