IL_6N1D_007

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6N1D|1|A16S|G|129|||A, 6N1D|1|A16S|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1429

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6N1D|1|A16S|U|129
6N1D|1|A16S|G|129|||A
6N1D|1|A16S|A|130
6N1D|1|A16S|C|131
*
6N1D|1|A16S|G|231
6N1D|1|A16S|G|232

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS16

30S ribosomal protein S16

Chain AS17

30S ribosomal protein S17

Chain AS20

30S ribosomal protein S20