IL_6N1D_018
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_018 not in the Motif Atlas
- Geometric match to IL_4LFB_018
- Geometric discrepancy: 0.1217
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6N1D|1|A16S|G|446
6N1D|1|A16S|G|447
6N1D|1|A16S|A|448
6N1D|1|A16S|C|449
6N1D|1|A16S|G|450
*
6N1D|1|A16S|C|483
6N1D|1|A16S|G|484
6N1D|1|A16S|G|485
6N1D|1|A16S|U|486
6N1D|1|A16S|A|487
6N1D|1|A16S|C|488
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS04
- 30S ribosomal protein S4
- Chain AS16
- 30S ribosomal protein S16
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