3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_018 not in the Motif Atlas
Geometric match to IL_4LFB_018
Geometric discrepancy: 0.1217
The information below is about IL_4LFB_018
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6N1D|1|A16S|G|446
6N1D|1|A16S|G|447
6N1D|1|A16S|A|448
6N1D|1|A16S|C|449
6N1D|1|A16S|G|450
*
6N1D|1|A16S|C|483
6N1D|1|A16S|G|484
6N1D|1|A16S|G|485
6N1D|1|A16S|U|486
6N1D|1|A16S|A|487
6N1D|1|A16S|C|488

Current chains

Chain A16S
16S rRNA

Nearby chains

Chain AS04
30S ribosomal protein S4
Chain AS16
30S ribosomal protein S16

Coloring options:


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