IL_6N1D_027

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_027 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.123

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6N1D|1|A16S|G|654
6N1D|1|A16S|A|655
*
6N1D|1|A16S|U|751
6N1D|1|A16S|G|752
6N1D|1|A16S|A|753
6N1D|1|A16S|C|754

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS08

30S ribosomal protein S8

Chain AS15

30S ribosomal protein S15