IL_6N1D_031
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGUAG*CGCAGAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6N1D|1|A16S|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_031 not in the Motif Atlas
- Homologous match to IL_6CZR_143
- Geometric discrepancy: 0.1665
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6N1D|1|A16S|G|683
6N1D|1|A16S|A|684
6N1D|1|A16S|G|685
6N1D|1|A16S|U|686
6N1D|1|A16S|A|687
6N1D|1|A16S|G|688
*
6N1D|1|A16S|C|699
6N1D|1|A16S|G|700
6N1D|1|A16S|C|701
6N1D|1|A16S|A|702
6N1D|1|A16S|G|703
6N1D|1|A16S|A|704
6N1D|1|A16S|U|705
6N1D|1|A16S|A|706
6N1D|1|A16S|C|707
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AS11
- 30S ribosomal protein S11
Coloring options: