IL_6N1D_038

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_038 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.2649

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|A16S|G|953
6N1D|1|A16S|G|954
*
6N1D|1|A16S|C|1226
6N1D|1|A16S|A|1227
6N1D|1|A16S|C|1228

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain AS13

30S ribosomal protein S13

Chain AS19

30S ribosomal protein S19