IL_6N1D_046

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_046 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2231

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

6N1D|1|A16S|G|1127
6N1D|1|A16S|C|1128
*
6N1D|1|A16S|G|1143
6N1D|1|A16S|G|1144
6N1D|1|A16S|C|1145

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS09

30S ribosomal protein S9