IL_6N1D_056

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_056 not in the Motif Atlas

Geometric match to IL_5MWI_002

Geometric discrepancy: 0.1217

The information below is about IL_5MWI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6N1D|1|A16S|G|1405
6N1D|1|A16S|U|1406
6N1D|1|A16S|C|1407
*
6N1D|1|A16S|G|1494
6N1D|1|A16S|U|1495
6N1D|1|A16S|C|1496

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA