IL_6N1D_063
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_063 not in the Motif Atlas
- Homologous match to IL_7RQB_001
- Geometric discrepancy: 0.1411
- The information below is about IL_7RQB_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.6
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N1D|1|A23S|G|24
6N1D|1|A23S|U|25
6N1D|1|A23S|G|26
6N1D|1|A23S|G|27
6N1D|1|A23S|A|28
6N1D|1|A23S|U|29
6N1D|1|A23S|G|30
*
6N1D|1|A23S|C|510
6N1D|1|A23S|U|511
6N1D|1|A23S|G|512
6N1D|1|A23S|A|513
6N1D|1|A23S|A|514
6N1D|1|A23S|A|515
6N1D|1|A23S|C|516
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL20
- 50S ribosomal protein L20
- Chain AL22
- 50S ribosomal protein L22
- Chain AL32
- 50S ribosomal protein L32
Coloring options: