3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUGGAUG*CUGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_063 not in the Motif Atlas
Homologous match to IL_7RQB_001
Geometric discrepancy: 0.1411
The information below is about IL_7RQB_001
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.6
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6N1D|1|A23S|G|24
6N1D|1|A23S|U|25
6N1D|1|A23S|G|26
6N1D|1|A23S|G|27
6N1D|1|A23S|A|28
6N1D|1|A23S|U|29
6N1D|1|A23S|G|30
*
6N1D|1|A23S|C|510
6N1D|1|A23S|U|511
6N1D|1|A23S|G|512
6N1D|1|A23S|A|513
6N1D|1|A23S|A|514
6N1D|1|A23S|A|515
6N1D|1|A23S|C|516

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain AL20
50S ribosomal protein L20
Chain AL22
50S ribosomal protein L22
Chain AL32
50S ribosomal protein L32

Coloring options:


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