IL_6N1D_064

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6N1D|1|A23S|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_064 not in the Motif Atlas

Homologous match to IL_7RQB_002

Geometric discrepancy: 0.1142

The information below is about IL_7RQB_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6N1D|1|A23S|G|36
6N1D|1|A23S|C|37
*
6N1D|1|A23S|G|442
6N1D|1|A23S|A|443
6N1D|1|A23S|C|444

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL20

50S ribosomal protein L20