IL_6N1D_066

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

6N1D|1|A23S|G|101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_066 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.2283

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

6N1D|1|A23S|G|81
6N1D|1|A23S|G|82
6N1D|1|A23S|G|83
6N1D|1|A23S|A|84
6N1D|1|A23S|G|85
*
6N1D|1|A23S|C|97
6N1D|1|A23S|G|98
6N1D|1|A23S|U|99
6N1D|1|A23S|G|101
6N1D|1|A23S|G|102
6N1D|1|A23S|A|103
6N1D|1|A23S|U|104
6N1D|1|A23S|C|105

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL24

50S ribosomal protein L24

Chain AL29

50S ribosomal protein L29