IL_6N1D_069

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_069 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.1258

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6N1D|1|A23S|U|239
6N1D|1|A23S|G|240
6N1D|1|A23S|A|241
6N1D|1|A23S|G|242
6N1D|1|A23S|U|243
6N1D|1|A23S|A|244
6N1D|1|A23S|G|245
*
6N1D|1|A23S|C|253
6N1D|1|A23S|G|254
6N1D|1|A23S|A|255
6N1D|1|A23S|A|256
6N1D|1|A23S|A|257
6N1D|1|A23S|G|258

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL15

50S ribosomal protein L15

Chain AL35

50S ribosomal protein L35