IL_6N1D_084
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 6N1D|1|A23S|G|776, 6N1D|1|A23S|A|788, 6N1D|1|A23S|A|789, 6N1D|1|A23S|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_084 not in the Motif Atlas
- Geometric match to IL_4V9F_030
- Geometric discrepancy: 0.1274
- The information below is about IL_4V9F_030
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_57881.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N1D|1|A23S|G|775
6N1D|1|A23S|G|776
6N1D|1|A23S|A|777
*
6N1D|1|A23S|U|787
6N1D|1|A23S|A|788
6N1D|1|A23S|A|789
6N1D|1|A23S|C|790
6N1D|1|A23S|C|791
Current chains
- Chain A23S
- 23S rRNA
Nearby chains
- Chain AL02
- 50S ribosomal protein L2
- Chain AL04
- 50S ribosomal protein L4
- Chain AL22
- 50S ribosomal protein L22
- Chain AL34
- 50S ribosomal protein L34
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