3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGC*GGAG
Length
7 nucleotides
Bulged bases
6N1D|1|A23S|G|932
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_086 not in the Motif Atlas
Homologous match to IL_7RQB_025
Geometric discrepancy: 0.2966
The information below is about IL_7RQB_025
Detailed Annotation
Intercalated cWW
Broad Annotation
Intercalated cWW
Motif group
IL_52767.4
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

6N1D|1|A23S|C|844
6N1D|1|A23S|G|845
6N1D|1|A23S|C|846
*
6N1D|1|A23S|G|931
6N1D|1|A23S|G|932
6N1D|1|A23S|A|933
6N1D|1|A23S|G|934

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain AL30
50S ribosomal protein L30

Coloring options:


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