IL_6N1D_087

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAC*GGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_087 not in the Motif Atlas

Geometric match to IL_7RQB_026

Geometric discrepancy: 0.1693

The information below is about IL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_94165.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6N1D|1|A23S|C|846
6N1D|1|A23S|U|847
6N1D|1|A23S|G|848
6N1D|1|A23S|A|849
6N1D|1|A23S|C|850
*
6N1D|1|A23S|G|928
6N1D|1|A23S|G|929
6N1D|1|A23S|U|930
6N1D|1|A23S|G|931

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL30

50S ribosomal protein L30