3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
6N1D|1|A23S|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_098 not in the Motif Atlas
Geometric match to IL_5J7L_279
Geometric discrepancy: 0.1902
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6N1D|1|A23S|G|1011
6N1D|1|A23S|U|1012
6N1D|1|A23S|C|1013
*
6N1D|1|A23S|G|1149
6N1D|1|A23S|C|1150

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain AL13
50S ribosomal protein L13
Chain AL20
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.6564 s
Application loaded.