IL_6N1D_147

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_147 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1474

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6N1D|1|A23S|C|2350
6N1D|1|A23S|G|2351
6N1D|1|A23S|A|2352
6N1D|1|A23S|G|2353
*
6N1D|1|A23S|C|2364
6N1D|1|A23S|G|2365
6N1D|1|A23S|A|2366
6N1D|1|A23S|G|2367

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL27

50S ribosomal protein L27

Chain AL33

50S ribosomal protein L33

Chain AL35

50S ribosomal protein L35