IL_6N1D_151

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_151 not in the Motif Atlas

Geometric match to IL_7RQB_093

Geometric discrepancy: 0.1614

The information below is about IL_7RQB_093

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

6N1D|1|A23S|C|2456
6N1D|1|A23S|U|2457
6N1D|1|A23S|G|2458
6N1D|1|A23S|A|2459
*
6N1D|1|A23S|U|2493
6N1D|1|A23S|G|2494
6N1D|1|A23S|G|2495

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A5S

5S ribosomal RNA; 5S rRNA

Chain AL16

50S ribosomal protein L16

Chain AL27

50S ribosomal protein L27