IL_6N1D_172
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGA*UA
- Length
- 5 nucleotides
- Bulged bases
- 6N1D|1|B16S|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_172 not in the Motif Atlas
- Homologous match to IL_5J7L_001
- Geometric discrepancy: 0.1756
- The information below is about IL_5J7L_001
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.14
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
6N1D|1|B16S|U|30
6N1D|1|B16S|G|31
6N1D|1|B16S|A|32
*
6N1D|1|B16S|U|552
6N1D|1|B16S|A|553
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BS12
- 30S ribosomal protein S12
Coloring options: