3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
6N1D|1|B16S|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_188 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1372
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6N1D|1|B16S|G|409
6N1D|1|B16S|G|410
6N1D|1|B16S|A|411
6N1D|1|B16S|A|412
6N1D|1|B16S|G|413
6N1D|1|B16S|A|414
6N1D|1|B16S|A|415
6N1D|1|B16S|G|416
*
6N1D|1|B16S|U|427
6N1D|1|B16S|G|428
6N1D|1|B16S|U|429
6N1D|1|B16S|A|430
6N1D|1|B16S|A|431
6N1D|1|B16S|A|432
6N1D|1|B16S|C|433

Current chains

Chain B16S
16S rRNA

Nearby chains

Chain BS04
30S ribosomal protein S4

Coloring options:


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