IL_6N1D_193

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_193 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1655

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6N1D|1|B16S|C|569
6N1D|1|B16S|G|570
6N1D|1|B16S|U|571
6N1D|1|B16S|A|572
6N1D|1|B16S|A|573
6N1D|1|B16S|A|574
6N1D|1|B16S|G|575
*
6N1D|1|B16S|C|880
6N1D|1|B16S|G|881

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS05

30S ribosomal protein S5

Chain BS08

30S ribosomal protein S8

Chain BS12

30S ribosomal protein S12

Chain BS17

30S ribosomal protein S17