IL_6N1D_194
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_194 not in the Motif Atlas
- Homologous match to IL_5J7L_027
- Geometric discrepancy: 0.1463
- The information below is about IL_5J7L_027
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6N1D|1|B16S|U|580
6N1D|1|B16S|G|581
6N1D|1|B16S|U|582
6N1D|1|B16S|A|583
6N1D|1|B16S|G|584
*
6N1D|1|B16S|U|757
6N1D|1|B16S|G|758
6N1D|1|B16S|A|759
6N1D|1|B16S|G|760
6N1D|1|B16S|G|761
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain B23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS08
- 30S ribosomal protein S8
- Chain BS12
- 30S ribosomal protein S12
- Chain BS15
- 30S ribosomal protein S15
- Chain BS17
- 30S ribosomal protein S17
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