IL_6N1D_196

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_196 not in the Motif Atlas

Homologous match to IL_6CZR_137

Geometric discrepancy: 0.1992

The information below is about IL_6CZR_137

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

6N1D|1|B16S|G|597
6N1D|1|B16S|U|598
*
6N1D|1|B16S|A|640
6N1D|1|B16S|U|641
6N1D|1|B16S|A|642
6N1D|1|B16S|C|643

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS08

30S ribosomal protein S8

Chain BS17

30S ribosomal protein S17