IL_6N1D_211

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6N1D|1|B16S|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_211 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1881

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6N1D|1|B16S|G|1048
6N1D|1|B16S|U|1049
6N1D|1|B16S|G|1050
*
6N1D|1|B16S|C|1208
6N1D|1|B16S|C|1209

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS14

30S ribosomal protein S14 type Z