IL_6N1D_215

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_215 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.2309

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6N1D|1|B16S|G|1061
6N1D|1|B16S|U|1062
6N1D|1|B16S|C|1063
*
6N1D|1|B16S|G|1193
6N1D|1|B16S|U|1194
6N1D|1|B16S|C|1195

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS03

30S ribosomal protein S3

Chain BS05

30S ribosomal protein S5

Chain BS09

30S ribosomal protein S9

Chain BS10

30S ribosomal protein S10

Chain BS14

30S ribosomal protein S14 type Z