IL_6N1D_218
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAGC*GG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_218 not in the Motif Atlas
- Homologous match to IL_5J7L_052
- Geometric discrepancy: 0.4414
- The information below is about IL_5J7L_052
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_15052.4
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 8
Unit IDs
6N1D|1|B16S|C|1128
6N1D|1|B16S|C|1129
6N1D|1|B16S|A|1130
6N1D|1|B16S|G|1131
6N1D|1|B16S|C|1132
*
6N1D|1|B16S|G|1142
6N1D|1|B16S|G|1143
Current chains
- Chain B16S
- 16S rRNA
Nearby chains
- Chain BS09
- 30S ribosomal protein S9
Coloring options: