3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CCAGC*GG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_218 not in the Motif Atlas
Homologous match to IL_5J7L_052
Geometric discrepancy: 0.4414
The information below is about IL_5J7L_052
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_15052.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
8

Unit IDs

6N1D|1|B16S|C|1128
6N1D|1|B16S|C|1129
6N1D|1|B16S|A|1130
6N1D|1|B16S|G|1131
6N1D|1|B16S|C|1132
*
6N1D|1|B16S|G|1142
6N1D|1|B16S|G|1143

Current chains

Chain B16S
16S rRNA

Nearby chains

Chain BS09
30S ribosomal protein S9

Coloring options:


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