IL_6N1D_218

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_218 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.4414

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6N1D|1|B16S|C|1128
6N1D|1|B16S|C|1129
6N1D|1|B16S|A|1130
6N1D|1|B16S|G|1131
6N1D|1|B16S|C|1132
*
6N1D|1|B16S|G|1142
6N1D|1|B16S|G|1143

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS09

30S ribosomal protein S9