IL_6N1D_223

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_223 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1626

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B16S|C|1303
6N1D|1|B16S|G|1304
6N1D|1|B16S|G|1305
6N1D|1|B16S|A|1306
6N1D|1|B16S|U|1307
6N1D|1|B16S|U|1308
*
6N1D|1|B16S|A|1329
6N1D|1|B16S|U|1330
6N1D|1|B16S|G|1331
6N1D|1|B16S|A|1332
6N1D|1|B16S|A|1333
6N1D|1|B16S|G|1334

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS13

30S ribosomal protein S13

Chain BTHX

30S ribosomal protein Thx