IL_6N1D_228

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_228 not in the Motif Atlas

Homologous match to IL_5J7L_061

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6N1D|1|B16S|C|1412
6N1D|1|B16S|A|1413
6N1D|1|B16S|U|1414
*
6N1D|1|B16S|G|1486
6N1D|1|B16S|G|1487
6N1D|1|B16S|G|1488

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BS12

30S ribosomal protein S12