IL_6N1D_230

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_230 not in the Motif Atlas

Geometric match to IL_4LFB_062

Geometric discrepancy: 0.1683

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6N1D|1|B16S|C|1431
6N1D|1|B16S|G|1432
6N1D|1|B16S|A|1433
6N1D|1|B16S|A|1434
6N1D|1|B16S|G|1435
*
6N1D|1|B16S|C|1466
6N1D|1|B16S|G|1467
6N1D|1|B16S|A|1468
6N1D|1|B16S|G|1469

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain B23S

Large subunit ribosomal RNA; LSU rRNA

Chain BL19

50S ribosomal protein L19

Chain BS20

30S ribosomal protein S20