IL_6N1D_238
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_238 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.1157
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6N1D|1|B23S|G|188
6N1D|1|B23S|G|189
6N1D|1|B23S|A|190
6N1D|1|B23S|A|191
6N1D|1|B23S|C|192
6N1D|1|B23S|U|193
6N1D|1|B23S|G|194
*
6N1D|1|B23S|C|201
6N1D|1|B23S|U|202
6N1D|1|B23S|C|203
6N1D|1|B23S|A|204
6N1D|1|B23S|G|205
6N1D|1|B23S|U|206
6N1D|1|B23S|A|207
6N1D|1|B23S|C|208
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BL15
- 50S ribosomal protein L15
- Chain BL28
- 50S ribosomal protein L28
- Chain BL34
- 50S ribosomal protein L34
- Chain BL35
- 50S ribosomal protein L35
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