IL_6N1D_248
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_248 not in the Motif Atlas
- Geometric match to IL_4WF9_020
- Geometric discrepancy: 0.0922
- The information below is about IL_4WF9_020
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6N1D|1|B23S|C|672
6N1D|1|B23S|C|673
6N1D|1|B23S|G|674
*
6N1D|1|B23S|C|806
6N1D|1|B23S|U|807
6N1D|1|B23S|G|808
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BL04
- 50S ribosomal protein L4
- Chain BL15
- 50S ribosomal protein L15
Coloring options: