3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUAAGUG*CUCAAG
Length
13 nucleotides
Bulged bases
6N1D|1|B23S|C|1141|||A, 6N1D|1|B23S|A|1143
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_269 not in the Motif Atlas
Geometric match to IL_4WF9_039
Geometric discrepancy: 0.1387
The information below is about IL_4WF9_039
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_57188.5
Basepair signature
cWW-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

6N1D|1|B23S|C|1018
6N1D|1|B23S|U|1019
6N1D|1|B23S|A|1020
6N1D|1|B23S|A|1021
6N1D|1|B23S|G|1022
6N1D|1|B23S|U|1023
6N1D|1|B23S|G|1024
*
6N1D|1|B23S|C|1140
6N1D|1|B23S|U|1141
6N1D|1|B23S|C|1141|||A
6N1D|1|B23S|A|1142
6N1D|1|B23S|A|1143
6N1D|1|B23S|G|1144

Current chains

Chain B23S
23S rRNA

Nearby chains

Chain BL06
50S ribosomal protein L6
Chain BL13
50S ribosomal protein L13
Chain BL36
50S ribosomal protein L36

Coloring options:


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