IL_6N1D_269

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

6N1D|1|B23S|C|1141|||A, 6N1D|1|B23S|A|1143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_269 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1387

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6N1D|1|B23S|C|1018
6N1D|1|B23S|U|1019
6N1D|1|B23S|A|1020
6N1D|1|B23S|A|1021
6N1D|1|B23S|G|1022
6N1D|1|B23S|U|1023
6N1D|1|B23S|G|1024
*
6N1D|1|B23S|C|1140
6N1D|1|B23S|U|1141
6N1D|1|B23S|C|1141|||A
6N1D|1|B23S|A|1142
6N1D|1|B23S|A|1143
6N1D|1|B23S|G|1144

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL06

50S ribosomal protein L6

Chain BL13

50S ribosomal protein L13

Chain BL36

50S ribosomal protein L36