IL_6N1D_269
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 6N1D|1|B23S|C|1141|||A, 6N1D|1|B23S|A|1143
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_269 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1387
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
6N1D|1|B23S|C|1018
6N1D|1|B23S|U|1019
6N1D|1|B23S|A|1020
6N1D|1|B23S|A|1021
6N1D|1|B23S|G|1022
6N1D|1|B23S|U|1023
6N1D|1|B23S|G|1024
*
6N1D|1|B23S|C|1140
6N1D|1|B23S|U|1141
6N1D|1|B23S|C|1141|||A
6N1D|1|B23S|A|1142
6N1D|1|B23S|A|1143
6N1D|1|B23S|G|1144
Current chains
- Chain B23S
- 23S rRNA
Nearby chains
- Chain BL06
- 50S ribosomal protein L6
- Chain BL13
- 50S ribosomal protein L13
- Chain BL36
- 50S ribosomal protein L36
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