IL_6N1D_274

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6N1D|1|B23S|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_274 not in the Motif Atlas

Homologous match to IL_7RQB_044

Geometric discrepancy: 0.3266

The information below is about IL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N1D|1|B23S|G|1087
6N1D|1|B23S|A|1088
6N1D|1|B23S|G|1089
6N1D|1|B23S|U|1090
6N1D|1|B23S|G|1091
*
6N1D|1|B23S|C|1100
6N1D|1|B23S|U|1101
6N1D|1|B23S|C|1102

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain BL36

50S ribosomal protein L36