IL_6N1D_291

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

6N1D|1|B23S|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_291 not in the Motif Atlas

Homologous match to IL_7RQB_062

Geometric discrepancy: 0.3718

The information below is about IL_7RQB_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6N1D|1|B23S|U|1489
6N1D|1|B23S|A|1490
6N1D|1|B23S|G|1491
*
6N1D|1|B23S|C|1499
6N1D|1|B23S|G|1500

Current chains

Chain B23S

23S rRNA

Nearby chains

Chain AS04

30S ribosomal protein S4

Chain BL02

50S ribosomal protein L2